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April 2011

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CFP: Workshop on Discovery through Visualization in Large Scale Digital Libraries
by Christopher Collins 22 Apr '11

22 Apr '11

------------------Workshop Announcement-------------------- Discovery through Visualization in large scale Digital Libraries June 16-17, 2011 (Thursday afternoon - Friday morning) Ottawa, Canada http://vialab.science.uoit.ca/dvlsdl11 A Workshop in conjunction with ACM/IEEE Joint Conference on Digital Libraries 2011 (JCDL2011) http://jcdl2011.org The "Discovery through Visualization in large scale Digital Libraries" workshop will be held on June 16th and 17th, 2011 in Ottawa, Canada in conjunction with the ACM/IEEE Joint Conference on Digital Libraries. We solicit your participation to make this workshop a success. Organizers ---------- Christopher Collins, University of Ontario Institute of Technology Christopher.Collins(a)uoit.ca Glen Newton, Carleton University newtong(a)acm.org Program Committee ----------------- Stéfan Sinclair, McMaster University Contact ------- Please send inquiries for further information to: dvlsdl11(a)easychair.org. Themes ------ Large scale digital repositories are becoming ever more prevalent, allowing researchers easy access to large amounts of data in a wide variety of forms -- electronic and scanned books, archival records, audio documents, illustrations, etc. These DLs contain valuable and useful domain knowledge, but discovering this knowledge is constrained both by the scale of the DL and the limits of the tools extant to exploit it. This workshop will focus on interactive information visualization as a collection of tools and techniques which promise to increase our ability to understand, curate, manage, and analyze large scale DLs, and to support research and discovery by end users of DLs. This includes the discovery of knowledge about (new and existing) facts, concepts, relationships, behaviours, and processes. Goals ----- * to provide a stimulating forum for researchers in visualization and large scale DLs. * to identify a research agenda concerning the area of visualization of large scale DLs * to exploit potentially useful theories, methodologies, and technologies * to establish long-term interdisciplinary collaboration between researchers * to raise the awareness of the state of the art in this area Call for Papers --------------- All interested persons are invited to register for the workshop even if they do not submit a paper but papers are encouraged to focus discussion and increase participation. Position papers as well as those reporting on work in progress are welcome. We invite submissions on a broad range of topics including: * Domain specific discovery * Link and relationship analysis * Semantic web and linked data visualization * Mixed-media (e.g. text+illustration) DLs * Usability and interaction techniques for visual interfaces * Structure and granularity of textual information * Visualizing data variation over time and space * Real world applications & examples * Scalability issues Paper proposals are due on May 22nd. Please see the submission details for information about paper format and the submission process. The submitted papers will be assessed for their relevance to the workshop and a limited number of papers will be selected for presentation at the workshop. Selected papers will be distributed to attendees at the workshop and made available for long-term access through publication in a special issue of the IEEE-TCDL Bulletin. All interested persons are invited to register for the workshop even if they do not submit a paper. However, in order to focus discussion and increase participation, submission of papers is strongly encouraged. Paper Format ------------ Papers must not exceed 6 pages. All contributions must be written in English and must follow the ACM formatting guidelines and use the ACM templates, which are available at: http://www.acm.org/sigs/pubs/proceed/template.html . Submission Process ------------------ Please submit papers by May 22nd via the workshop's EasyChair submission page: http://www.easychair.org/conferences/?conf=dvlsdl11 Important dates --------------- May 22: Paper submissions due May 27: Notification of acceptance June 1: Submission of final, camera-ready papers for distribution at the workshop June 13-17: JCDL 2011 June 16-17: Discovery through Visualization in large scale Digital Libraries June 16: Workshop dinner-plan to go to dinner with other participants Important JCDL dates -------------------- Web site: http://www.jcdl2011.org/ June 13: Conference: Tutorials June 14-16: JCDL Conference program June 16-17: Conference: Workshops ______________________________________________________________ Christopher Collins, Ph.D. \ Assistant Professor Faculty of Science \ University of Ontario Institute of Technology (UOIT) (905) 721-8668 ext. 6581 \ http://www.christophercollins.ca

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CFP: Symposium on Biological Data Visualization
by Carsten Görg 11 Apr '11

11 Apr '11

*** CALL FOR PARTICIPATION *** BioVis 2011: IEEE Symposium on Biological Data Visualization at VisWeek 2011 in Providence, RI October 23-24, 2011 Website: http://www.biovis.net Paper Submission Deadline: April 30, 2011 Abstract Submission Deadline: July 8, 2011 *** Contents *** (1) Aims and Scope (2) Topics (3) Symposium Format (4) Submission Types and Criteria (5) General Expectations (Ethics Guidelines) (6) Review Process (7) Important Dates (8) Supplemental Material and Formatting Guidelines (9) Publications (10) Submission (11) Paper and Abstract Awards (12) Organizing Committee (13) International Program Committee *** 1. Aims and Scope *** The rapidly expanding field of biology creates enormous challenges for computational visualization techniques that enable researchers to gain insight from their large and highly complex data sets. The goal of the first IEEE Symposium on Biological Data Visualization (BioVis 2011) is to create the premier international and interdisciplinary event for all aspects of visualization in biology. This symposium will bring together researchers from the visualization, bioinformatics, and biology communities with the purpose of educating, inspiring, and engaging visualization researchers in biological data visualization, as well as bioinformatics and biology researchers in state-of-the-art visualization research. As the first annual BioVis Symposium, this event seeks to emphasize inclusion and interaction between these communities as its primary impact. The symposium will serve as a platform for researchers from these fields to increase the impact of visualization approaches in biology. The breadth and diversity of biological research areas will enable researchers from all parts of the visualization community to contribute to this effort, and the symposium will provide an excellent opportunity to initiate interdisciplinary collaborations. Finally, it will provide an outlet and training ground for young and freshly minted visualization researchers with a keen interest in problems of biology and provide a venue for researchers in biology and bioinformatics to share pressing visualization challenges and potential solutions in their fields. *** 2. Topics *** We are looking for contributions on all aspects of visualization in biology. Suggested topics include, but are not limited to: - Genome and sequence data, including genomic variation data - Multivariate omics data (transcriptomics, proteomics, metabolomics, etc.) - Phylogenetic data - Ecological and taxonomic data - Biological networks and pathways - Biological ontologies - Molecular structures (protein structures, RNA structures, etc.) - Subcellular, cellular, tissue- and organ-level structures - Visualization of image data, such as microscopic or radiological data - Integration of image and omics data for systems biology - Modeling, simulation and visualization of biological systems - Visualization in neurobiology and developmental biology - Systems and software frameworks for biological visualization - Integration of visualization in biological workflows or collaborative processes - Visualization and visual analytics of integrated data sets - Evaluation of biological visualization systems including interfaces, usability, laboratory experiments, and field studies - Creation and visualization of biological atlases and metadata - Processes for interdisciplinary collaboration between biology and visualization *** 3. Symposium Format *** The symposium will be a two-day single-track event with keynote and invited talks, papers sessions, panels, and abstracts presented through posters, demos, or videos. Tutorial sessions on visualization in bioinformatics/biology will be organized. *** 4. Submission Types and Criteria *** Given the goal of bringing together members of both the biology and visualization communities for discussion, the symposium solicitation is purposefully broad and open-minded to diverse types and lengths of submissions. Authors are encouraged to identify the intent of their submission. Each paper will be reviewed by the Program Committee and given appropriate time and venue at the symposium in accordance with its stated intent and length. Types of submissions include, but are not limited to: - Detailed reports of original research - Experience reports, highlighting lessons learned from the deployment of relevant previously published work - Descriptions of work in progress and preliminary results - Demonstrations of new or recent systems, both open source and proprietary - Descriptions of analysis challenges where current tools fall short for specific datasets and goals, to inform the visualization community in producing better future solutions Authors should indicate the intended publication type of their submissions, as one of two categories: *Papers*: Up to 8 page papers describing high-quality research that is not necessarily fully completed but offers new insight. (Additional figures, etc. can be included as supplemental materials.) Selected papers will have an opportunity for an extended and refined invited follow-up submission (see Section 9). Authors will have an oral presentation in a session with an emphasis on questions and discussion with the audience. *Abstracts*: Up to 2 page abstracts that either describe early-stage research or highlight previously published work that has been extended since the original publication. Accepted abstracts will be presented as posters, interactive demos or videos at the symposium and all presenters will have the opportunity to give a brief overview of their work in a plenary "fast-forward session". Additionally, presenters of selected abstracts will be given the opportunity for longer oral presentation at the symposium. *** 5. General Expectations (Ethics Guidelines) *** At least one author of an accepted submission must attend the symposium to present the work. When submitting your paper you will be asked to provide a complete list of authors even when submitting an anonymized version of the manuscript. This is required to avoid potential conflicts of interest when assigning reviewers. In the event that the authorship changes after submission, one of the initially specified authors must attend the symposium. Submissions will be treated as confidential communications during the review process, so submission does not constitute public disclosure of any ideas therein. Submissions should contain no information or materials that will be proprietary or confidential at the time of publication (at the symposium), and should cite no publications that are proprietary or confidential at the time of publication. Our symposium will adhere to the VGTC ethics guidelines for reviewers that can be found at http://vgtc.org/wpmu/techcom/conferences/ethics-guidelines/ . *** 6. Review Process *** The Program Committee will involve reviewers from both the visualization and bioinformatics communities. Papers will be reviewed for novelty and contribution. Abstracts will be reviewed for quality and value to the symposium audience as well as format. *** 7. Important Dates *** Paper submission*: Saturday, April 30, 2011 Notification of acceptance of papers: Thursday, June 30, 2011 Abstract submission: Friday, July 8, 2011 Notification of acceptance of abstracts: August 15, 2011 Camera ready copy: Wednesday, August 31, 2011 All deadlines are at 5:00 pm Pacific Time (PDT). *** 8. Supplemental Material and Formatting Guidelines *** Papers can include full-color figures throughout. We encourage the use of digital video to enhance the submission, particularly if part or all of the work addresses interactive techniques. Submission of working code and other supplemental material in order to increase the reproducibility of the work is also encouraged. The review process will be optionally double-blind for those who want to submit their work anonymously. When submitting for double-blind reviewing you are asked NOT to include any identifying information in the submission. Alternatively, the review process will be single- blind, i.e., the reviewers know the identity of the authors, but the authors do not know the identity of the reviewers. Links to detailed guidelines for preparing a proper submission and supplementary data can be found on http://www.biovis.net. Authors must follow the style guidelines specified therein. *** 9. Publications *** The symposium proceedings will consist of all accepted papers and will appear in the IEEE Digital Library. Accepted abstracts will be made available on the symposium website. To increase the visibility of visualization within the bioinformatics and biology communities, a selection of the best accepted papers will be invited to be published in expanded form in an open-access, peer- reviewed bioinformatics journal. *** 10. Submission *** Details on how to submit papers and abstracts are provided on http://www.biovis.net/submission.html . *** 11. Paper and Abstract Awards *** Best paper and abstract prizes will be awarded. Submissions that resulted from a successful collaboration between researchers from both the visualization and biology communities will be especially regarded. Reviewers will be queried on the review form with a question "Should we consider this paper/abstract for the best paper/abstract award? (yes/no/maybe)". *** 12. Organizing Committee *** Email: contact(a)biovis.net General Chairs: - Nils Gehlenborg, Harvard University, USA - Raghu Machiraju, The Ohio State University, USA - Torsten Möller, Simon Fraser University, Canada Paper Chairs: - Jessie Kennedy, Edinburgh Napier University, UK - Jos Roerdink, University of Groningen, The Netherlands Abstract Chairs: - Miriah Meyer, Harvard University, USA - Cydney Nielsen, British Columbia Genome Sciences Center, Canada Invited Session Chairs: - Matt Hibbs, The Jackson Laboratory, USA - Sean O'Donoghue, European Molecular Biology Laboratory (EMBL), Germany Tutorial Chairs: - Lars Linsen, Jacobs University, Germany - William Ray, The Ohio State University, USA Exhibit Chairs and Industry Liaisons: - Michael McGuffin, Ecole de Technologie Superieure, Canada - Robert Kincaid, Agilent Laboratories, USA Website and Publicity Chairs: - Carsten Görg, University of Colorado Denver, USA - Brian Staats, MITRE, USA *** 13. International Program Committee *** - Jan Aerts, KU Leuven, Belgium - Enrico Bertini, University of Konstanz, Germany - Chengpeng Bi, Children's Mercy Hospital Kansas City, USA - John Boyle, Institute for Systems Biology, USA - Alvis Brazma, European Bioinformatics Institute, UK - Michael Cantor, Lawrence Berkley Laboratory, USA - Urska Cvek, Louisiana State University Shreveport, USA - Inna Dubchak, Lawrence Berkley Laboratory, USA - David Duke, University of Leeds, UK - Tom Freeman, The Roslin Institute, UK - Carsten Görg, University of Colorado, USA - Georges Grinstein, University of Massachusetts Lowell, USA - Hans-Christian Hege, Zuse-Institute Berlin, Germany - Daniel Huson, University of Tübingen, Germany - Matt Hibbs, The Jackson Laboratory, USA - Larry Hunter, University of Colorado, USA - Chris Johnson, University of Utah, USA - Steven Jones, British Columbia Genome Sciences Center, Canada - Alark Joshi, Boise State, USA - Igor Jurisica, University of Toronto, Canada - Robert Kincaid, Agilent Laboratories, USA - Martin Krzywinski, British Columbia Genome Sciences Center, Canada - Michael Lappe, Max Planck Berlin, Germany - Robert van Liere, Amsterdam, Netherlands - David Marshall, Scottish Crop Research Institute, UK - Guy Melancon, University of Bordeaux, France - Jill Mesirov, Broad Institute, USA - Scooter Morris, UCSF, USA - Kay Nieselt, University of Tübingen, Germany - Bernhard Preim, University of Magdeburg, Germany - James Procter, University of Dundee, UK - Sonja Prohaska, University of Leipzig, Germany - William Ray, The Ohio State University, USA - Reinhard Schneider, EMBL Heidelberg, Germany - Falk Schreiber, IPK Gatersleben, Germany - Brian Staats, MITRE, USA - Marjan Trutschl, Louisiana State University Shreveport, USA - Fons Verbeek, University of Leiden, The Netherlands - Ting Wang, Washington University, USA - Gunter Weber, Lawrence Berkeley National Lab, USA - Michel Westenberg, Technical University Eindhoven, The Netherlands - Ross Whitaker, University of Utah, USA - Bang Wong, Broad Institute, USA

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